Approaches to Sequence the HTT CAG Repeat Expansion and Quantify Repeat Length Variation

نویسندگان

چکیده

Background: Huntington’s disease (HD) is an autosomal dominant neurodegenerative disorder caused by the expansion of HTT CAG repeat. Affected individuals inherit ?36 repeats and longer alleles cause earlier onset, greater severity faster progression. The repeat genetically unstable in soma a process that preferentially generates somatic expansions, proportion which associated with Somatic mosaicism has traditionally been assessed semi-quantitative PCR-electrophoresis approaches have limitations (e.g., no information about sequence variants). Genotyping-by-sequencing could allow for some these to be overcome. Objective: To investigate utility PCR sequencing genotype large (>50 CAGs) HD quantify mosaicism. Methods: We applied MiSeq PacBio products transgenic R6/2 mice carrying ?55, ?110, ?255 ?470 CAGs. For each alleles, we compared length distributions generated different tissues at two ages. Results: were able full all samples. However, samples CAGs biased towards shorter lengths. Conclusion: can used considered, but this approach cannot estimate modal allele size or expansions ?250 review alternative may quantification contractions very expansions.

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ژورنال

عنوان ژورنال: Journal of Huntington's disease

سال: 2021

ISSN: ['1879-6397', '1879-6400']

DOI: https://doi.org/10.3233/jhd-200433